species:   Rhsol
pid:       PID0620
parent:    Rhi-milR-133
paralog:   
locus:     KB317783.1:37469-37544
matures:   ['UGAUGUAUUGAAUGCUCUGGGACA', 'UCUUAGUGGUGUUCAAUGUACAGGG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317783.1:37469-37544

24 out of bounds
34 alignments
25 proper strand
24 stranded perfect matches

        ***************************   ****************************          
CUUGUAUGAGUGAUGUAUUGAAUGCUCUGGGACACAAAUCAUCUUAGUGGUGUUCAAUGUACAGGGCCCUACCAAC
(((((((.........((((((((((((((((.........)))))).)))))))))))))))))...........
----------UGAUGUAUUGAAUGCUCUGGGACA------------------------------------------ l=24 a=4 c
-----------------------------------------UCUUAGUGGUGUUCAAUGUACAGGG---------- l=25 a=0 c*
----------UGAUGUAUUGAAUGCUCUGGGACAC----------------------------------------- l=25 a=10 ma
----------------------------------------AUCUUAGUGGUGUUCAAUGUACAGGG---------- l=26 a=0 ma*

----------UGAUGUAUUGAAUGCUCUGG---------------------------------------------- l=20 a=2 
----------UGAUGUAUUGAAUGCUCUGGGACA------------------------------------------ l=24 a=4 (c)
----------UGAUGUAUUGAAUGCUCUGGGACAC----------------------------------------- l=25 a=10 (ma)
-------------UGUAUUGAAUGCUCUGGGACAC----------------------------------------- l=22 a=2 
---------------UAUUGAAUGCUCUGGGACAC----------------------------------------- l=20 a=2 
---------------UAUUGAAUGCUCUGGGACACAu--------------------------------------- l=22 a=1 
-----------------UUGAAUGCUCUGGGACACAAAUC------------------------------------ l=23 a=1 
-------------------------------------------UUAGUGGUGUUCAAUGUACAGGG---------- l=23 a=1 
--------------------------------------------UAGUGGUGUUCAAUGUACAGGGC--------- l=23 a=1 
-----------------------------------------------UGGUGUUCAAUGUACAGGGCC-------- l=21 a=1 

mb-01011
ax-1001001
ku-01
ss-101010101000
fn-101
